PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00166.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 216aa    MW: 25154.5 Da    PI: 7.79
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00166.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.63.8e-17151433128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWka 85 
                               G++FhPt  e++ +yL   +++++l+ ++  ++ vd+y   +Pw++      e +  yf ++ +kk+ +  r +r + ++g+Wk+
  Sme2.5_00166.1_g00005.1  15 LGCHFHPTHREVI-KYLVGFATDEPLPGQDEvMQLVDVYAEkDPWQIV-----EGSTGYFITPLKKKKDHHIRWKRgVGDNGTWKS 94 
                              69***********.9**********88766549999*996549****6.....55778******************8889****** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfy.kgrapkge.....ktdWvmheyrl 128
                              + ++k+v+++kg+l+g  + L +    ++p ++       +W+m ey+l
  Sme2.5_00166.1_g00005.1  95 QDSQKQVFDHKGRLIGYVHHLKYTpASSKPCSSiikelFGEWLMTEYSL 143
                              ************************52244433334333679******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.47913165IPR003441NAC domain
SuperFamilySSF1019414.71E-1913165IPR003441NAC domain
PfamPF023655.7E-1016143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MADHLHHHQA KRRSLGCHFH PTHREVIKYL VGFATDEPLP GQDEVMQLVD VYAEKDPWQI  60
VEGSTGYFIT PLKKKKDHHI RWKRGVGDNG TWKSQDSQKQ VFDHKGRLIG YVHHLKYTPA  120
SSKPCSSIIK ELFGEWLMTE YSLYTGDINK KIINTDFAIC KIKKKKQKKS KNQDKDMTMS  180
ETEVTKFINS VLHEEDTDHD QLDATNNINL EDYEFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062529.13e-74PREDICTED: uncharacterized protein LOC107008123 isoform X1
TrEMBLM0ZGR11e-71M0ZGR1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000004504e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-08NAC domain containing protein 2